GMSC10.90AA.287_926_867

Summary of this 90AA cluster, including consensus sequences, ecological annotation, quality evidence, and linked 100AA members.

This is a 90AA family-level cluster. In GMSC, 90AA and 100AA refer to catalogue identity thresholds rather than sequence length: 90AA groups related smORFs at 90% amino acid identity, while 100AA accessions are non-redundant sequence entries.

The linked 100AA members let you inspect the individual non-redundant sequences assigned to this family, while the taxonomy and habitat summarise the ecological context of the cluster.

Consensus sequences

Representative protein sequence (99 amino acids)

MCIRDRSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPSAEALLYGILQLQKKIRNKGSLER

Legend

AHydrophobic (A, V, I, L, M)

AAromatic (F, W, Y)

APolar uncharged (S, T, N, Q, C)

APositive (K, R, H)

ANegative (D, E)

ASpecial (G, P)

AOther / unknown (X, U, O, *)

Consensus nucleotide sequence

ATGTGTATAAGAGACAGGTCAGATGTTATGATAGTTGCTGGTACCTTAACAAACAAAATGGCTCCTGCATTAAGAAAAGTTTACGATCAGATGCCTGAACCTAGGTATGTAATATCTATGGGTAGTTGTGCAAATGGTGGAGGTTATTATCATTATTCATACTCTGTAGTGAGAGGATGTGATCGAGTGGTACCTGTTGATGTATATGTCCCTGGATGCCCTCCCTCAGCTGAAGCACTACTTTATGGAATTTTACAGTTACAGAAAAAAATTAGAAATAAAGGTTCTTTAGAAAGATAA

Annotations

Taxonomic assignment

Bacteria (domain)

Habitat

activated sludge,air,algae associated,annelidae associated,anthropogenic,beatle gut,bee gut,bird gut,bird skin,built environment,cattle associated,cattle gut,chicken gut,coral associated,crustacean gut,deer gut,extreme pH,fermented food,groundwater,hot spring associated,human gut,human mouth,human saliva,human skin,ice associated,insect associated,lake associated,marine,mine,mouse gut,planarian associated,plant associated,pond associated,river associated,sediment,soil,thermal vent associated,wastewater,water associated

Quality overview
High quality is defined as: Pass all in silico quality tests (Not in Antifam database, Pass the terminal checking, P-value of RNAcode < 0.05) and contained at least one item of experimental evidence (Align to at least 2 metatranscriptomic samples, alignment to at least 2 Riboseq samples, or the coverage of metaproteomic peptides on small protein sequences >0.5)

Not high quality

Review the detailed quality checks below to understand the evidence supporting this cluster.

Cluster members

Load the 100AA non-redundant smORF accessions assigned to this 90AA family to inspect their sequences, habitats, and taxonomy.

For more information, see (Duan et al., 2024).